PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0023s0160.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 1274aa    MW: 143159 Da    PI: 4.8543
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0023s0160.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-0812501273226
                            -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                            k ++C+++a+ G+Ck+G++C F H+
  Sphfalx0023s0160.2.p 1250 KDVPCKYYAQ-GYCKRGETCVFRHS 1273
                            6789******.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.9E-10215273IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.21E-9216273IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.564219285IPR019787Zinc finger, PHD-finger
SMARTSM002498.8E-8221267IPR001965Zinc finger, PHD-type
CDDcd155681.13E-19221266No hitNo description
PROSITE patternPS013590222282IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.245.107.3E-17490568IPR003121SWIB/MDM2 domain
SuperFamilySSF475929.59E-15490564IPR003121SWIB/MDM2 domain
SMARTSM001510.002498567IPR019835SWIB domain
PfamPF022014.8E-12507563IPR003121SWIB/MDM2 domain
SMARTSM007191.4E-38625735IPR004343Plus-3 domain
SuperFamilySSF1590422.22E-26625745IPR004343Plus-3 domain
PROSITE profilePS5136022.399625758IPR004343Plus-3 domain
PfamPF031265.6E-22630733IPR004343Plus-3 domain
SuperFamilySSF552771.44E-1510121069IPR003169GYF domain
CDDcd000721.77E-1410161073No hitNo description
PROSITE profilePS5082914.49310161070IPR003169GYF domain
SMARTSM004441.6E-1410171072IPR003169GYF domain
Gene3DG3DSA:3.30.1490.403.0E-1610181070IPR003169GYF domain
PfamPF022132.8E-1210191062IPR003169GYF domain
PROSITE profilePS5010315.01812481273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-612491273IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-512501273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-412521273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1274 aa     Download sequence    Send to blast
MLATCFTGRR DAMATEKTSF LLDEEAGSIT TAIAAAAVVP TLIAQTANDD DDDVVVRDSF  60
PDNTNKAIID KAELEEESVR DADGSGQQTM HRDEEEANLK GENQTAEEAE QDMAEEQKTD  120
AAAAAAVIKV EKTDQEKEDA EEMSEALRVE GDQATLEHQQ QQRDGVPNGE LKMVKEPAAA  180
AYQNDKKRVQ GLVQERQKKQ CRRGGGHATT IDERKKDEED VCYICFDGGD LVMCDRRSCP  240
KAYHLNCIGR DAAFFKKKGA WICGWHFCSS CTKPGSFQCY TCPIAYCGSC VKEANFFMLR  300
KRKGLCEECL PIVIMIEHNQ TVNSEGVEVD FEDKETYEFL FKEYWLGLKN RLSLTMPELD  360
KDGKPANENH ADSENGGSDT ENQDPSDVDE LGTESDRAVE ESDEDGDETL DGRKWKRKKI  420
KVAPTFGDLV VVNQADTFTE GGEHKEEEED EDKKEEEEDD NDDNYDDDDD DDDDDVADVS  480
DIPSRKIEDW ASKEVLDFVI HMKGDPMKPL TRFAVNHLLW SYIKQHQLQD PGKKINCDER  540
LQVIFGKKLL GQSEMYRQLK EHFPLKESVS AAKSSKEADR IVKDEAREAD GAEDKLDRAT  600
VKDKRRGRRR SDEKFERPDG NDFAAITPKN INLIYLRRSL LEDLLDDPEF DSKVVDTFVK  660
IRVPGNASTL DTCYRLVLIT GTRLQTEFYK AGRKLTNIVL DILNLQKKEE LTIDLVSNQD  720
FSEEECQRLR QSIKCGFLKT LTVWFETERQ RLVNLRDRAS EKGRKKELRE CVEKLQELSN  780
PAFRAAKLQA RPEVSADPQM GLGYESDASD DKPVTDGFSN HQTKVSPGIS WEKGSVAPYN  840
RRDSSAVEDS SFGGRKGDWD SHRYKPYSTR GSNGSRDWVQ KGHETGRSSE KSFGHDTNSS  900
QEKSSWHEQR GGGRDWTKDH RDYVQEQQND QGGAENWKAT GKSRSDHWGG DSIGSKFAKD  960
EFRTPIFDQP KLNTGSLQRE PVGPASTVLL PLSNIRVTSP ERSVLSQADL DIMEREKVWH  1020
YQDPTGTSQG PFSMEQLRKW NTTGLFPVDL RIRRTGQTHE NSILLTNALA GRFAEERGPW  1080
TSNIVTGLQS SNRDRAGGSS ISGLGEGRVS TWGVGRGIGD DRRWDAKQDD LDVPSRTAHW  1140
GTRDPDAVYD RSNSWPQARN NSYGSSPSAT GRADDCGPLR SRGDNDSWAP QRLAGGSRER  1200
SLQDIGISAG RSGWARYSGR DSSNTGSWNE DSGSRDRSYP SERSSRASKK DVPCKYYAQG  1260
YCKRGETCVF RHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gng_D4e-16213287980Histone-lysine N-methyltransferase NSD3
4gng_A4e-16213287980Histone-lysine N-methyltransferase NSD3
4gnf_A4e-16213287980Histone-lysine N-methyltransferase NSD3
4gne_A4e-16213287980Histone-lysine N-methyltransferase NSD3
4gnd_C4e-16213287980Histone-lysine N-methyltransferase NSD3
4gnd_A4e-16213287980Histone-lysine N-methyltransferase NSD3
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.13e-54nucleic acid binding;zinc ion binding;DNA binding